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Metabolomics Platform
Joint Service Unit
US23 – AMMICa
Platform Type
Technology Platform
Principal Investigator
Prof. Claudia Grajeda-Iglesias
Research Areas
Spatial Analysis, Bioinformatics/Data Analysis, Metabolomics
Abstract
The mass spectrometers used in the metabolomics platform enable the measurement of all potential classes of metabolites, for both targeted and untargeted approaches. Profiling is performed using a high-resolution mass spectrometer (HRMS) coupled with ultra-high-performance chromatography (UHPLC). Targeted metabolomic
analysis relies on the MRM (multiple reaction monitoring) technique following separation by UHPLC, depending on the properties of the metabolite of interest. We routinely quantify amino acids and their derivatives, fatty acids, acylcarnitines, acylglycerides, nucleotides, neutral lipids, and molecules involved in glycolysis and the Krebs cycle, among others.
Analyses can be performed on various types of biological sample extracts, such as biofluids, fecal samples, and tissues from human cohorts, animal experiments, or cell cultures.
Mass spectrometry imaging technology enables unbiased analysis of the spatial distribution of thousands of metabolites within biological tissues and cell cultures.
The platform brings together all the technical resources required for a metabolomics project, from the extraction of metabolites from the biological matrix to data analysis and the reporting of results. It is open to researchers at Gustave Roussy, as well as to external laboratories, whether public or private.
Services Offered
Non-exhaustive list of services offered:
• Definition and design of the experimental setup.
• Advice on project implementation.
• Advice and assistance with sample preparation and quality control.
• Analysis via LCMS profiling.
• Targeted analyses of molecular families: AnP/coenzymes/cofactors; polyamines; phosphate sugars/glycolysis; bile acids; short-chain fatty acids; free fatty acids; carnitines,
phosphatidylcholine…
• Customized targeted analyses.
• Isotope labeling expertise.
• Mass spectrometry imaging.
• High-resolution mass measurement.
• Data processing.
• Bioinformatics and statistical analysis.
The platform includes the following equipment for metabolomic analysis:
• UHPLC U3000 Dionex - Orbitrap q-Exactive Thermo Scientific
• UHPLC 1290 Binary Pump Agilent - QQQ 6470 Agilent
• DESI XS – Synapt XS Waters
Contact Us
If you are considering entrusting us with an analysis, please contact us to learn more about the available options, define the service, and obtain a quote: metabolomique@gustaveroussy.fr
Team
KROEMER Guido - Platform Scientific Director
Other status (including apprentice)
Civil servant researcher
Employer: Other
APRAHAMIAN Fanny
Research Technician or equivalent
Employer: Gustave Roussy
GRAJEDA IGLESIAS Claudia - Platform Operational Manager
Research Engineer or equivalent
Employer: Gustave Roussy
Key Publications
Contact
- Address
-
Research Centers
20 Rue du Dr. Pinel
94 800 Villejuif - Phone
- 0142115216